Growing

IBR has a new fridge!!!

Some pics

I have uploaded some pictures of the travels I managed to do last month. Forgive me if I don’t upload them again but it took me a whole day to get them up once, plus, we pay per Mb over here, and since they don’t speak Spanish anyway, you can go to the other blog to see them. I hope you like them!

Vote for us

Two of our MSc students have entered the Dell Education Challenge. Help them get to the semifinal voting for them on the challenge website. Help empower these two promissing scientists make their idea of promoting science among children a reality.

note: I think you have to register to vote for them. Please, take a few minutes to do it and help us out.

We look for partner institutions in the US

In case someone new to this blog arrives to this post, let me introduce ourselves. The Kampala International University is a non-for-profit private tertiary institution with base in Uganda. It has campuses in Kampala (capital of Uganda), Ishaka (Western Uganda) and Dar-es-Salam (largest city in Tanzania). The person typing the keys is the director of the Institute of Biomedical Research that KIU recently created at the School of Health Sciences in Ishaka.

Our efforts are focussed in providing facilities, training and support to local researchers so they can develop their research agendas aimed to alleviate Africa’s disease burden. In these efforts, we are open to collaborations with any institution that values the social impact that science and scientists can have. their role in the development of low and middle income countries. Below you can find information about a call that could help us pursue our goals together with yours.

http://www07.grants.gov/search/search.do?&mode=VIEW&oppId=204133

Document Type: Grants Notice

Funding Opportunity Number: APS-ASHA-13-000001

Opportunity Category: Discretionary

Posted Date: Oct 15, 2012

Creation Date: Oct 15, 2012

Original Closing Date for Applications: Apr 15, 2013

Current Closing Date for Applications: Apr 15, 2013

Archive Date: May 15, 2013

Funding Instrument Type: Cooperative Agreement
Grant

Category of Funding Activity: Education, Health

Award Ceiling: $2,000,000

Award Floor: $0

CFDA Number(s):
98.006 -- Foreign Assistance to American Schools and Hospitals Abroad (ASHA)

Cost Sharing or Matching Requirement: No

Eligible Applicants

Public and State controlled institutions of higher education
Nonprofits having a 501(c)(3) status with the IRS, other than institutions of higher education
Private institutions of higher education

Additional Information on Eligibility:

Agency Name

Agency for International Development

Description

The United States Agency for International Development (USAID), Office of American Schools and Hospitals Abroad (ASHA), is accepting funding applications from U.S. Organizations that assist schools, libraries and medical centers outside the United States to serve as study and demonstration centers for American ideas and practices.

I am setting up a lab in Africa

see what I have been doing with my holiday…

We are moving

Follow how our last adventure develops through the Uganda MolBio blog. We are moving!!

What we need to give a Molecular Biology Course in Uganda

Can someone help us out getting some of these?
Tris base
EDTA pH8.0
Sodium dodecyl sulphate (SDS)
NaCl
KCl
Na₂HPO₄
KH₂PO₄
Acetic acid
Glycine
Bromophenol blue
Dithiothreitol
ß-mercaptoethanol
Phenol
Chloroform
Iso-amyl alcohol
Tryptone
Yeast extracts
NaOH
Ethanol
MgCl2
CaCl2
Na2 Acetate
Potassium acetate
hexadecyltrimethylammonium bromide (CTAB)
Protinese K enzyme
Ammonium acetate
Tips for micropipettes (white, yellow and blue colors)
Latex gloves
Eppendorf tubes
Black and white polaroid films
Taq Polymerase
dNTPS 100 mM
PCR buffers 10X
pGEM-T vector (a set with relevant cutting enzymes)
Agarose powder
Restriction Enzymes (HindIII, EcoRI, BamHI)
DNA ladders (100 base pair, 1KB)
Ethidium Bromide
Agarose gel loading buffers

THANKS IN ADVANCE JUST FOR TRYIING

Drop me an e-mail if you get anything amigosdeibruganda(arroba)gmail.com

More information about the course on this other blog

By the way, if anyone is interested in volunteer-teach at the event, do not hesitate to contact me.

Priorities helping out the Institute of Biomedical Research

Let’s try to organize our efforts in this matter… Any initiative to help out setting up the Institute of Biomedical Research should be communicated via mail to amigosdeibruganda(at)gmail.com.

Even though it is one of the human inventions that more troubles brings to my phylosophical mind, what we need the most, and it is in addition the easiest thing to move around, is money. Donations will be done via one of the following mechanisms:

• wire transfer to an account in Uganda or Spain. Details via mail.
• on-line fundraising for particular projects that we will explain and advertise as they come. It will most probably be through the http://www.youcaring.com/ site since it is the only one that I have found that doesn’t charge transaction fees. I don’t know you but, to me, making money out of other people’s efforts and charity just doesn’t sound right…

In future posts I will develop some fundraising ideas that I already mentioned in the most popular post of the blog. The pen-recycling squad is already shaping up in Spain and we will soon explain how to join. These campaigns are usually country-specific, so feel free to start something similar wherever you are. All posts concerning donations and fundraising will have the “paticipation” tag so they are easier to find. Don’t forget to take a look to the initial post to see if tehre is anything you can do.

Now, about general use materials. I think we have paper and folders covered for a while with a couple of those efficient women that populate my life. We could use some pens, white board markers and eraser, post-it packs, memory sticks, external hard disks, and a screw-driver and a torch. All these things could be obtained here and sending them overseas would be more expensive than the value they have. Keep them only if I can take them with me somehow, or if they can be sent with a more valuable shipment.

The following will be  a list of priorities, the things in which we would spend the money if we had any. Tese are the same priorities for anything you might be able to find in a lab or warehouse. The golden rule is that you should only ship things that are valuable enough to make the costs of the delivery a worthy investment. DHL seems to be the chosen courier from UK. Not sure about the US but I imagine is the same. ask before sending anything because it is necessary to include a phone number as a contact. Any package should CLEARLY state that it contains donations for the Kampala International University. In the surprising case that you get quite a few things, we shall pool together everything coming from Europe to make one single (more affordable) shipment. The base camp will be Huesca. Castellón and Zaragoza will also be delivery points. Things coming from the States, at the moment, will be handled from San Diego. If this gets bigger, we will see what is more convenient. Do not hesitate to e-mail if you have ANY question (amigosdeibruganda(at)gmail.com. I am going to do a trip to Spain in a few weeks and also in December. I can bring things in my luggage then. I will (most probably) be in San Diego at the end of May, maybe in New York a few weeks later.

So, the list:

• Improvements in the lab
  • Changing the locking system on the door to allow people getting in and out keeping the door closed. We just need to change the lockers for padlocks. We have asked for a budget and will let you know when we get it.
  • Covering the windows with mesh so the lab isn’t taken by termites in every storm and we keep outside other ordinary insects.

• Internet connection for the lab through Orange3G costs us 299000 Ugandan Shillings ($120, 92€, 75 GBP). The DVC is negotiating with Orange-Uganda the connection for the whole campus but even if that arrives, it won’t be free.
• We also need a first shipment of flies from the Blomington collection but I still don’t know the total cost.
• Equipments:
  • micropipettes, urgent! We only have a partial set (thanks, you-know-who),
  • at least one table-top microcentrifuge, even better if we get two of them. Right now we have none and it’s kind of hard to do anything,
  • precision scale (the one we have is a beautiful piece of decoration ranging 1 to 10 grams, and we don’t even have the weights to make it work),
  • vortex,
  • spectrophotometer,
  • refrigerator,
  • and a long wishlist:
    • at least one complete electrophoresis tank (the smaller the better) and two or three gel trays. Right now we have one tank with lid and another one without (e.g. useless) and one single gel tray with two combs,
    • -20ºC freezer,
    • incubators to keep the flies at constant temperature,
    • speedvacuum
    • SDS-PAGE set
    • motorized homogenizer
    • microscopes to work with flie
    • …
• Various Lab Materials:
  • autoclavable bottles, 100, 250 and 500 ml
  • beakers, flasks, calibrated tubes of various volumes
  • Polaroid film for Fotodyne gele-capture system
  • Inoculation loops and Digralsky spreaders
  • calibrated glass pipettes
  • brushes to clean calibrated tubes
  • glass tubes for bacterial growth 
  • racks for 1.5ml tubes 
  • tip boxes 
  • bunsen burners 
  • …
• Consumables:
  • 1.5ml tubes
  • tips (10, 200 y 1000 microlitres)
  • 50ml falcon tubes (of 15ml we are served at the moment)
  • petri plates
  • bottles to grow flies
  • whatman and absorbent paper
  • …
• Reagents and products:
  • agarose ($$$) and agar
  • ethidium bromide
  • ingredients for fly food, LB, PBS, TBE and other popular lab solutions
  • phenol, chlorophorm, sodium acetate, ethanol, isopropanol, TRI-reagent…
  • fenol, cloroformo, acetato sódico, etanol, propanol, TRI-reagent…
  • restriction enzimes, ligase, polymerase… See if one of those lab representatives can send us some samples  
  • …
• Various:
  • water dispenser
  • printer (there might be one available for donation, but I add it just in case)
  • computers with a decent RAM (we have enough of the slow frustration-indecur ones)
  • a copy (digital or analogic) of
    • The Genome of Drosophila melanogaster, Dan L. Lindsley y Georgianna G. Zimm
    • The Development of Drosophila melanogaster, M. Bates y A. Martínez-Arias
    • Fly Pushing: The Theory and Practice of Drosophila Genetics, Ralph J. Greenspan
    • Current Protocols in Molecular Biology
    • and other useful lab manuals (ask me before you do any work in case we have them already)

and I am sure I am leaving something out… THANK YOU!!!

PS: You can now check out the Institute on the website of KIU-Western Campus.

Habemus website!!!!!

We finally are a tab on the website of the Western Campus of the Kampala International University. Yujuuuuuuu!!!!!

 

Vision

The Institute of Biomedical Research wants to develop and maintain a leadership role in the region's biomedical research scene.

Mission Statement

The IBR is a platform for the empowerment of women and men of diverse background who want to excel as socially responsible scientists and is dedicated to the promotion, development and delivery of excellence in biomedical research within all aspects of healthcare.

The IBR aims to provide leadership that inspires local professors and students to develop their research programs in a collaborative environment. The primary intellectual and research concerns of the Institute are the areas of Neurobiology, Genetics and Molecular Biology, and Epidemiology and Clinical Studies.

Core Values

 

• The IBR management will work under strict rules of transparency to gain the respect and trust of renowned international funding entities.
• The IBR will offer the leadership, support and opportunities for development that researchers need to fulfill their potential.
• All faculty, students and staff working at the IBR will act with honesty and integrity in all the IBR operations.
• All faculty, students and staff working at the IBR will respect and value the diversity of backgrounds, experiences, approaches and ideas of all individuals.
• All faculty, students and staff working at the IBR will respectfully accept new ideas and will be open to learning from others and embrace collaborative working.

Goals of the IBR

 

• Be a world class institution that provides high-quality facilities and education programs to impact the knowledge of women and men of all races.

• Advance the frontiers of learning and break new grounds, using research as a tool for teaching, and for the creation and dissemination of knowledge of the highest quality.

• Empower local researchers in the establishment of their own research groups that address the scientific questions that are more urgent for Africa and its people.

• Create a platform where highly qualified professionals find the facilities and support they need to develop their career in a socially responsible manner, driving their research project by the needs of the region and impacting the quality of life of those surrounding them.

• Establish a transparent management system that attracts funds from international cooperation agencies and scientific societies.

• Enhance capacity building through education and training, in order to meet the needs and challenges of the 21^st century in Africa.

• Establish and fasten the promotion of African tradition, culture and scientific knowledge.

For those willing to help

I’m preparing a list of priorities and establishing the contacts to manage the sending and delivery of donations, both things and money. Be patient; we will soon be organized and we will put this thing to fly. Thank you all so much for your interest, your energy: you are the blood that gives oxigen to my cells.

Thank you!!!!!

Ok, not even two days since I uploaded the "Ideas" post and this is already too big. I need more hands!! First of all, thank you all for your responses! We'll see what we get in the end but, hey, no-one can say you aren't enthusisastic! And now, a bit of organization. True that I didn't give an address, basically because if you start sending things we are going to make the postal service rich, but we are going to waste too many resources on the way.

Look for things that

• a) I can take with me some time (in general all we need is a connection to Spain; I will pick them up from there but, even if there is no obvious connection, we can find it: I travel a lot and, if I am not going where you are, we'll try to find someone who can connect us).
• b) are valuable and difficult to get here, even if they are big. We will look for a safe and affordable way to get them here.

And, apart from that, I realized I need volunteers to handle the resources locally, something like a regional coordinator, someone who is the person to go to in a city/ state/ country. That person should filter things a bit at first and then arrange for the delivery with me. Any volunteers? I also need someone in Spain that helps me centralizing everything. With the unemployment rate that we have that shouldn't be a problem, right?

THANKS!!

Do you want to help me out setting up a lab in Africa?

How can you join me in my efforts to set up the Institute of Biomedical Research (IBR) in the medical campus of the Kampala International University (KIU) in Ishaka-Bushenyi, Uganda? (KIU is a non-for-profit private institution)

• When you go to the bank, to a restaurant, to IKEA… if there are publicity pens, pencils, notebooks, pen drives… take one for us. Give them to me next time we meet and I'll bring them.
• When you accumulate points shopping with your credit card, filling up the tank, or being loyal to one of those companies that exchange fidelity for things more or less useful, check the catalog looking for something that we can use here, a screw driver, a desk organizer… Same as before. All these things are not worth the money of the delivery. If we meet, I'll bring them with me; otherwise, money will be the easiest to move around the world and we can buy these things here.
• When you are running out of tape, eraser, ink in your white-board pen, paper… and you are going to buy more, buy one for us or, better, put the money aside and send it to us when you put some together.
• Do you remember all those half-used notebooks that are accumulating dust somewhere in your room? Take the sheets that are useful to you and send us the rest.I'm going to leave this one out for the moment because we don't have an easy and cheap way to bring them here, but keep it in mind.
  
• I know that the world is in crisis, but if you want to get involved a bit more, you can fund the master’s thesis of one of our MSc students. They already have a salary because, while they study, most of them are lecturers in the School of Health Sciences. What we need is the money to buy the reagents and materials for their research projects.
• You can also fund for a period of time one of the expenses in our lab, like the internet connection (this is urgent, unlimited access with a router that can handle four or five computers costs 90€ – $120 – per month), the paper for the printer (we are trying to be paper free printing only what is absolutely required, but most of the things are not digitalized around here and we need real paper to talk to other departments and make things happen), the food for the flies, or one of the works we need to get done in the lab ( a door that has a padlock, the mosquito meshes that will stop the mess that the termites create in every storm, or fixing a dark room for the fluorescence microscope that was donated by the University of Cambridge in 2011).
• Do you drink a lot of soda? Find out if your favourite brand offers the possibility of getting donations in exchange for collecting bottles, cans, plastic or metallic bottle tops. The same with any other product that you usually buy and has a certain environmental impact. Remember that you can “sell it” as a contribution to the environment in addition to the development of a developing country. If the company that sells the product doesn’t respond positively, try with an NGO that works for the environment.
• Start your own team of waste revalorisation. In some cities it is possible to get a small economic incentive for some of the products that we trash or recycle (paper, metal, glass bottles, old cell phones and other electronics, ink cartridges, plastic bags…). In some cases it is as easy as taking them to the store by the corner. What one single person can get is usually not worthy (that’s what the big companies that make money out of our rubbish are using to make business) but if you put a team together you can collect some products in all your blocks, maybe some schools and shops in the neighbourhood will help you out. Talk to associations of neighbours, parents or students. No matter how little the amount you collect, for us it will be like rain after a draught.
• If you are engineer or engineering student, you can come for a visit – you can use the excuse to go on a safari! - and design for us the solar power structure to provide with 24/7 electricity our lab. We also invite you to study the possibility to get energy out of the incredible amount of water that falls on our roofs almost every day, not only on our building but on the other blocks on campus, the hospital, and all the apartment blocks in which KIU hosts its employees.
• And the cheapest thing of all, help us extend the rumour, reaching someone that can help us. This is not an NGO, not for the moment at least, for the good and the bad. We don’t have the back up of x number of years making good, but we also don’t have a bureaucratic load or intermediaries that can exhaust the funds before they get to their destination. This is me, Marta, whom you know or of whom you have heard about probably through someone who knows me - otherwise you wouldn’t be reading this – and I will put every penny in the lab, I will show you pictures, and the bills and the account books, and I will host you in my home if you want to come and see it, and I will make room for you if you want to come and do something with your own hands, and I will thank you for every crumb of help with every cell of my body.

And if you work in a lab you can do much more:

• When you find an abandoned micropippete in a drawer, poor thing no-one is ever going to use it again because it is not trustable, keep it for us.
• When you change the electrophoresis system and the old gel trays don’t fit in the new tanks, keep them for us!
• Get books for us! Any lab manual, protocols book, manuals of genetics and Drosophila, textbooks of any subject that has anything to do with Biology and the Biomedical Sciences (and if you are teaching and you ask the publishers they will give them to you for free). If the copy that you have in the lab is old, ask your boss to get a new one and send us the old one.
• Ask about the warehouse of your university or institute, where all the things that no-one wants to use because they are old or obsolete go. Look for electrophoresis tanks, spectrophotometers, dissection microscopes to work with flies or C.elegans, scales, incubators, refrigerators, thermo-blocks, water baths, computers… Find out how to get a donation from your institution and if they could cover the delivery if it’s something big that I cannot carry in my luggage. If they don’t cover it, campaign a bit to raise the funds.
• Every time a commercial representative asks for your time to tell you about the virtues of a product, ask them to donate some samples for us in exchange. Any plastic consumable would be welcome (1.5ml tubes, conical tubes – 15 and 50ml), small tools (pestles, forceps, scalpels…), extraction kits, small samples of reagents, anything!!!
• If you find any funding source from your country to collaborate with developing countries in the fields of research and higher education, think of a project in which we can work together. We will do anything you need us to do: institutional back up, use of facilities, publicity, logistics of the event… I will, if you want to come and do something on the ground, host you in my house.

Basically, anything that you can think of that can help us start (and keep going) the engine of this laboratory will be received with applauds. Receive in advance the gratitude of the Director of the Institute for devoting ourselves the time to read all this. I will do my best to bring here everything you get for us at the minimal expense for you.

My apologies and explanations

Dear all:

I got back to Ishaka, Uganda, almost two weeks ago and I am already getting used to my new life and work at the Kampala International University -KIU. As I expected, I don’t see the way to keep blogging about my travels, my life in Africa and the anecdotes and adventures that come along with them in both Spanish and English. I have taken the decision to stick with my mother tongue in this. My apologies if it makes you feel that I abandon you. El caracol viajero will be from now on the only place where those things appear. I intend to blog about my experiences as scientist and that I will do it in English, not sure if here or somewhere else. I also want to get my other blogs reactivated and I hope you understand that I can’t keep writing things in duplicate.

I have adopted English as my language for work to the point that I am pretty useless when it comes to talk about science in Spanish. I understand that having a common language makes things much easier, much faster, and, now that I am kind of fluent, I see how English is a better choice than a Romanic language for that purpose. For story telling, though, it is no rival, especially for a Romanic-shaped brain like mine, late-learner and late-adopter of the Anglo ways. I do think in English in many moments throughout the day and there are concepts that I have learned in that language. There are, therefore, things that come to my mind in English and I intend to introduce a bit of that in El caracol. It’s just a bit of who I am, right? Someone who uses two languages to build one life.

Someone told me when I started this that I could write in English and people could use google translator. Well, google translator works as “well” the other way around and I am prioritizing my family here You’ll have to deal with the imperfections of the software, I’m afraid. Anyway, I hope you can take it as an excuse to learn a bit of Spanish and enjoy the shapes of the words, the pace of the paragraphs, the never-ending sentences… Who knows, you might even like it the same way I now like English when it was, together with Maths, the subject I hated the most in school. One never knows…

The apartment on the upper-right is my house now. Don’t you just love the combination of blue, green and white of the landscape?

Someone I met in Hawai’i

A glimpse of California

 

Surroundings of San Luis Obispo and San Francisco

Redwoods National Park

             

More of the Redwoods NP because I loved it.

Lake Tahoe

The little bit of Kings Canyon NP that was open

 

 

 

 

 

 

 

 

 

A walk through Sequoia National Park

A bit of Hawai’i

 

 

 

 

Waimanalo

Waimanalo is a residential area near what could be considered a reserve in the mainland. That means that, lucky me, I have ended up in my personal paradise, far from the tourists - if being in the same island they can be far - and with the possibility to observe how is life in Hawai\'i for those who call home this remote spot in the Pacific.

A few walks on the beach and the following conversation with whom plays the role of host, driver, guide, provider of fins (literally) and other useful equipment brought me to the conclusion that in Hawai\'i there are many people that get away, because they want to or because they have to, living on the beach of near campsites.

Camping in most of the island is easy and free, but you need a permit that is only given for a maximum of four days. Wednesdays and Thursdays, actually, it is not allowed to camp in most of the sites. All this in theory, of course. In practice some of hem get settled with so much stuff (including the stuff keeper dogs) that it is difficult to imagine that they are going anywhere in the future, not even in the far future. Apparently some of them manage to get settled alternating the name of different family members on the permit. Others simply stay where they are until they are kicked out. On Wednesdays and Thursdays I imagine they try to keep down the activity or maybe they tidy up a bit to be less obvious.

In Spain we call the homeless people sin techo - roofless people. We can call them the name we want, but they wake up with this everyday.

One, two, three

Three days ago I was trying to decide whether I should first visit the Sequoia NP or the Redwoods NP. I didn\\\\\\\'t know what to do and I remembered several friends had mentioned that they we going to Hawaii this Winter. out of curiosity, I checked the tickets...

Today I have boarded a Hawaiian Airlines flight to Honolulu. There I will meet a Ugandan-raft mate and with a bit of luck I will get more of an insider\\\\\\\'s look to the island than I would have thought.

While waiting to board (and it\\\\\\\'s been a long wait) I have been fighting more than playing with the iPad2. This thing is light and quite a fast web surfer, but it has it\\\\\\\'s flaws. I finally found the Spanish keyboard and, guess what: They forgot the accent! (and this people made 46.1 billion dollars profit last year?!). Typing is very easy but not being possible to tap inside a word to fix mistakes or change things (which, by the way, I can\\\\\\\'t find a reason why that is supposed to help writing) having the usual arrows to move around would come certainly handy. In summary, with the inexplicable language barrier, the shitty applications available for blog writing (windows live writer for iPad NOW!!!, please :) and the fact that eeeeeverything has to go through the cloud because it doesn\\\\\\\'t have a miserable USB port, right now it gets a poor D. I am sure it will improve, but it\\\\\\\'s going to have to work hard to make up for the money it cost.

Aloha!
o